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1

Metabolic regulation of Ganoderma lucidum extracts in high sugar and fat diet-induced obese mice by regulating the gut-brain axis

Diling, Chen, Yinrui, Guo, Longkai, Qi, Xiaocui, Tang, Yadi, Liu, Jiaxin, Feng, Xiangxiang, Zhu, Miao, Zeng, Ou, Shuai, Dongdong, Wang, Yizhen, Xie, Yang, Burton B., Qingping, Wu

Journal:

Journal of Functional Foods

Year:

2020

Language:

english

File:

PDF, 11.97 MB

english, 2020

2

Deep collaborative filtering for prediction of disease genes

Zeng, Xiangxiang, Lin, Yinglai, He, Yuying, Lv, Linyuan, Min, Xiaoping, Rodriguez-Paton, Alfonso

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2019

Language:

english

File:

PDF, 1.20 MB

english, 2019

3

A decision-making framework for precision marketing

You, Zhen, Si, Yain-Whar, Zhang, Defu, Zeng, XiangXiang, Leung, Stephen C.H., Li, Tao

Journal:

Expert Systems with Applications

Year:

2015

Language:

english

File:

PDF, 1.05 MB

english, 2015

4

Prediction of Drug–Gene Interaction by Using Metapath2vec

Zhu, Siyi, Bing, Jiaxin, Min, Xiaoping, Lin, Chen, Zeng, Xiangxiang

Journal:

Frontiers in Genetics

Year:

2018

Language:

english

File:

PDF, 1.46 MB

english, 2018

5

Repurpose Open Data to Discover Therapeutics for COVID-19 using Deep Learning

Zeng, Xiangxiang, Song, Xiang, Ma, Tengfei, Pan, Xiaoqin, Zhou, Yadi, Hou, Yuan, Zhang, Zheng, Li, Kenli, Karypis, George, Cheng, Feixiong

Journal:

Journal of Proteome Research

Year:

2020

File:

PDF, 3.27 MB

2020

6

Computing with viruses

Chen, Xu, Pérez-Jiménez, Mario J., Valencia-Cabrera, Luis, Wang, Beizhan, Zeng, Xiangxiang

Journal:

Theoretical Computer Science

Year:

2016

Language:

english

File:

PDF, 546 KB

english, 2016

7

Spin hall nano-oscillators based on two-dimensional Fe 3 GeTe 2 magnetic materials

Li, Rongxin, Yu, Ziyang, Zhang, Zhenhua, Shao, Yan, Wang, Xiangxiang, Finocchio, Giovanni, Lu, Zhihong, Xiong, Rui, Zeng, Zhongming

Journal:

Year:

2020

File:

PDF, 2.49 MB

2020

8

Sequence clustering in bioinformatics: an empirical study

Zou, Quan, Lin, Gang, Jiang, Xingpeng, Liu, Xiangrong, Zeng, Xiangxiang

Journal:

Briefings in Bioinformatics

Year:

2018

Language:

english

File:

PDF, 6.89 MB

english, 2018

9

Novel Carboxylated Chitosan-Based Triptolide Conjugate for the Treatment of Rheumatoid Arthritis

Zhang, Lan, Yan, Min, Chen, Kun, Tian, Qikang, Song, Junying, Zhang, Zijuan, Xie, Zhishen, Yuan, Yong, Jia, Yaquan, Zhu, Xin, Zhang, Zhenqiang, Wu, Xiangxiang, Zeng, Huahui

Journal:

Year:

2020

File:

PDF, 2.21 MB

2020

10

A novel molecular representation with BiGRU neural networks for learning atom

Lin, Xuan, Quan, Zhe, Wang, Zhi-Jie, Huang, Huang, Zeng, Xiangxiang

Journal:

Briefings in Bioinformatics

Year:

2019

Language:

english

File:

PDF, 2.09 MB

english, 2019

11

Prediction and validation of disease genes using HeteSim Scores

ZENG, XIANGXIANG, LIAO, YUANLU, liu, yuansheng, Zou, Quan

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.23 MB

english, 2016

12

MOEA/HD: A Multiobjective Evolutionary Algorithm Based on Hierarchical Decomposition

Xu, Hang, Zeng, Wenhua, Zhang, Defu, Zeng, Xiangxiang

Journal:

IEEE Transactions on Cybernetics

Year:

2017

Language:

english

File:

PDF, 2.87 MB

english, 2017

13

Computational methods for identifying the critical nodes in biological networks

Liu, Xiangrong, Hong, Zengyan, Liu, Juan, Lin, Yuan, Rodríguez-Patón, Alfonso, Zou, Quan, Zeng, Xiangxiang

Journal:

Briefings in Bioinformatics

Year:

2019

Language:

english

File:

PDF, 7.53 MB

english, 2019

14

Predicting disease-associated circular RNAs using deep forests combined with positive-unlabeled learning methods

Zeng, Xiangxiang, Zhong, Yue, Lin, Wei, Zou, Quan

Journal:

Briefings in Bioinformatics

Year:

2019

Language:

english

File:

PDF, 116.68 MB

english, 2019

15

Probability-based collaborative filtering model for predicting gene–disease associations

Zeng, Xiangxiang, Ding, Ningxiang, Rodríguez-Patón, Alfonso, Zou, Quan

Journal:

BMC Medical Genomics

Year:

2017

Language:

english

File:

PDF, 865 KB

english, 2017

16

Predicting enhancer-promoter interactions by deep learning and matching heuristic

Min, Xiaoping, Ye, Congmin, Liu, Xiangrong, Zeng, Xiangxiang

Journal:

Briefings in Bioinformatics

Year:

2020

File:

PDF, 1.17 MB

2020

17

Application of deep learning methods in biological networks

Jin, Shuting, Zeng, Xiangxiang, Xia, Feng, Huang, Wei, Liu, Xiangrong

Journal:

Briefings in Bioinformatics

Year:

2020

File:

PDF, 1.20 MB

2020

18

StackCPPred: A Stacking and Pairwise Energy Content-based Prediction of Cell-Penetrating Peptides and Their Uptake Efficiency

Fu, Xiangzheng, Cai, Lijun, Zeng, Xiangxiang, Zou, Quan, Martelli, Pier Luigi

Journal:

Year:

2020

Language:

english

File:

PDF, 378 KB

english, 2020

19

Circulating exosomal miR-27a and miR-130a act as novel diagnostic and prognostic biomarkers of colorectal cancer

Wang, Shukui, Liu, Xiangxiang, Pan, Bei, Sun, Li, Chen, Xiaoxiang, Zeng, Kaixuan, Hu, Xiuxiu, Xu, Tao, Xu, Mu

Journal:

Cancer Epidemiology Biomarkers & Prevention

Year:

2018

Language:

english

File:

PDF, 1.20 MB

english, 2018

20

Using MOEA with Redistribution and Consensus Branches to Infer Phylogenies

Min, Xiaoping, Zhang, Mouzhao, Yuan, Sisi, Ge, Shengxiang, Liu, Xiangrong, Zeng, Xiangxiang, Xia, Ningshao

Journal:

International Journal of Molecular Sciences

Year:

2017

Language:

english

File:

PDF, 2.65 MB

english, 2017

21

Reconstructing evolutionary trees in parallel for massive sequences

Zou, Quan, Wan, Shixiang, Zeng, Xiangxiang, Ma, Zhanshan Sam

Journal:

BMC Systems Biology

Year:

2017

Language:

english

File:

PDF, 473 KB

english, 2017

22

LRIG3 represses cell motility by inhibiting slug via inactivating ERK signaling in human colorectal cancer

Zeng, Kaixuan, Chen, Xiaoxiang, Xu, Mu, Liu, Xiangxiang, Li, Chenmeng, Xu, Xueni, Pan, Bei, Qin, Jian, He, Bangshun, Pan, Yuqin, Huiling, Sun, Xu, Tao, Wang, Shukui

Journal:

Year:

2020

Language:

english

File:

PDF, 6.47 MB

english, 2020

23

In vivo antitumor effects of carboxymethyl chitosan-conjugated triptolide after oral administration

Zeng, Huahui, Zhu, Xin, Tian, Qikang, Yan, Yinyin, Zhang, Lan, Yan, Min, Li, Ruiqin, Li, Xiaofang, Wang, Guoqiang, Ma, Jinlian, Su, Yufang, Zhang, Xiangbo, Ma, Linyu, Zhang, Zhenqiang, Wu, Xiangxiang

Journal:

Year:

2020

File:

PDF, 2.32 MB

2020

24

A weakly universal spiking neural P system

Xiangxiang Zeng, Chun Lu, Linqiang Pan

Journal:

Mathematical and Computer Modelling

Year:

2010

Language:

english

File:

PDF, 472 KB

english, 2010

25

The power of time-free tissue P systems: Attacking NP-complete problems

Liu, Xiangrong, Suo, Juan, Leung, Stephen C.H., Liu, Juan, Zeng, Xiangxiang

Journal:

Year:

2015

Language:

english

File:

PDF, 370 KB

english, 2015

26

Crystal structure of tetramethylammonium sulfanilate, C10H18N2O3S

Wang, Peizhi, Zeng, Huahui, Wu, Xiangxiang

Journal:

Zeitschrift für Kristallographie - New Crystal Structures

Year:

2016

Language:

english

File:

PDF, 612 KB

english, 2016

27

Preliminary studies of a novel cyclopentadienyl tricarbonyl technetium-99m fatty acid derivative for myocardical imaging

Zeng, Huahui, Zhang, Huabei, Wu, Xiangxiang, Chao, Fangfang, Yu, Gang, Zhang, Liqing, Jiang, Han, Liu, Hongbiao, Hou, Haifeng, Zhan, Hongwei, Zhang, Hong, Tian, Mei

Journal:

Journal of Labelled Compounds and Radiopharmaceuticals

Year:

2013

Language:

english

File:

PDF, 159 KB

english, 2013

28

On languages generated by spiking neural P systems with weights

Zeng, Xiangxiang, Xu, Lei, Liu, Xiangrong, Pan, Linqiang

Journal:

Information Sciences

Year:

2014

Language:

english

File:

PDF, 654 KB

english, 2014

29

Approaches for Recognizing Disease Genes Based on Network

Zou, Quan, Li, Jinjin, Wang, Chunyu, Zeng, Xiangxiang

Journal:

BioMed Research International

Year:

2014

Language:

english

File:

PDF, 560 KB

english, 2014

30

Similarity computation strategies in the microRNA-disease network: a survey

Zou, Quan, Li, Jinjin, Song, Li, Zeng, Xiangxiang, Wang, Guohua

Journal:

Briefings in Functional Genomics

Year:

2015

Language:

english

File:

PDF, 1.08 MB

english, 2015

31

Inferring microRNA-disease associations by random walk on a heterogeneous network with multiple data sources

Liu, Yuansheng, Zeng, Xiangxiang, He, Zengyou, Zou, Quan

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.11 MB

english, 2016

32

Complex Network Clustering by a Multi-objective Evolutionary Algorithm Based on Decomposition and Membrane Structure

Ju, Ying, Zhang, Songming, Ding, Ningxiang, Zeng, Xiangxiang, Zhang, Xingyi

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 2.24 MB

english, 2016

33

P53-induced miR-1249 inhibits tumor growth, metastasis, and angiogenesis by targeting VEGFA and HMGA2

Chen, Xiaoxiang, Zeng, Kaixuan, Xu, Mu, Liu, Xiangxiang, Hu, Xiuxiu, Xu, Tao, He, Bangshun, Pan, Yuqin, Sun, Huiling, Wang, Shukui

Journal:

Cell Death and Disease

Year:

2019

File:

PDF, 3.49 MB

2019

34

A component overlapping attribute clustering (COAC) algorithm for single-cell RNA sequencing data analysis and potential pathobiological implications

Peng, He, Zeng, Xiangxiang, Zhou, Yadi, Zhang, Defu, Nussinov, Ruth, Cheng, Feixiong, Panchenko, Anna R. R.

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 6.24 MB

english, 2019

35

Minirmd: accurate and fast duplicate removal tool for short reads via multiple minimizers

Liu, Yuansheng, Zhang, Xiaocai, Zou, Quan, Zeng, Xiangxiang, Robinson, Peter

Journal:

Year:

2020

File:

PDF, 215 KB

2020

36

[IEEE 2010 IEEE Fifth International Conference on Bio-Inspired Computing: Theories and Applications (BIC-TA) - Changsha, China (2010.09.23-2010.09.26)] 2010 IEEE Fifth International Conference on Bio-Inspired Computing: Theories and Applications (BIC-TA) - Small universal asynchronous spiking neural P systems

Pan, Linqiang, Zeng, Xiangxiang, Zhang, Xinyi

Year:

2010

Language:

english

File:

PDF, 994 KB

english, 2010

37

[IEEE 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Shenzhen, China (2016.12.15-2016.12.18)] 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - HPTree: Reconstructing phylogenetic trees for ultra-large unaligned DNA sequences via NJ model and Hadoop

Zou, Quan, Shixiang Wan,, Xiangxiang Zeng,

Year:

2016

Language:

english

File:

PDF, 614 KB

english, 2016

38

Development of 11 C-Labeled ω-sulfhydryl fatty acid tracer for myocardial imaging with PET

Wu, Xiangxiang, Wang, Peizhi, Liu, Ruixin, Zeng, Huahui, Chao, Fangfang, Liu, Hao, Xu, Caiyun, Hou, Haifeng, Yao, Qiong

Journal:

European Journal of Medicinal Chemistry

Year:

2017

Language:

english

File:

PDF, 891 KB

english, 2017

39

Elevated circulating miR-182 acts as a diagnostic biomarker for early colorectal cancer

Liu, Xiangxiang, Xu, Tao, Hu, Xiuxiu, Chen, XiaoXiang, Zeng, Kaixuan, Sun, Li, Wang, Shukui

Journal:

Cancer Management and Research

Year:

2018

Language:

english

File:

PDF, 1.41 MB

english, 2018

40

Corrigendum Investigation and development of maize fused network analysis with multi-omics [Plant Physiol. Biochem. 141 (2019) 380-387]

Jiang, Jing, Xing, Fei, Wang, Chunyu, Zeng, Xiangxiang, Zou, Quan

Journal:

Plant Physiology and Biochemistry

Year:

2019

Language:

english

File:

PDF, 451 KB

english, 2019

41

On Some Classes of Sequential Spiking Neural P Systems

Zhang, Xingyi, Zeng, Xiangxiang, Luo, Bin, Pan, Linqiang

Journal:

Neural Computation

Year:

2014

Language:

english

File:

PDF, 1.40 MB

english, 2014

42

Simulating Spiking Neural P Systems with Circuits

Zeng, Xiangxiang, Zhang, Xuan, Zhang, Jingrui, Liu, Juan

Journal:

Journal of Computational and Theoretical Nanoscience

Year:

2015

Language:

english

File:

PDF, 351 KB

english, 2015

43

LACTB, a novel epigenetic silenced tumor suppressor, inhibits colorectal cancer progression by attenuating MDM2-mediated p53 ubiquitination and degradation

Zeng, Kaixuan, Chen, Xiaoxiang, Hu, Xiuxiu, Liu, Xiangxiang, Xu, Tao, Sun, Huiling, Pan, Yuqin, He, Bangshun, Wang, Shukui

Journal:

Year:

2018

Language:

english

File:

PDF, 10.38 MB

english, 2018

44

Structural Hole Spanner in HumanNet Identifies Disease Gene and Drug targets

Zeng, Xiangxiang, Lin, Jiawei, Lin, Chen, Liu, Xiangrong, Rodriguez-Paton, Alfonso

Journal:

Year:

2018

Language:

english

File:

PDF, 1.53 MB

english, 2018

45

[IEEE 2009 Fourth International Conference on Bio-Inspired Computing (BIC-TA) - Beijing, China (2009.10.16-2009.10.19)] 2009 Fourth International on Conference on Bio-Inspired Computing - A weakly universal spiking neural P system

Zeng, Xiangxiang, Lu, Chun, Pan, Linqiang

Year:

2009

Language:

english

File:

PDF, 317 KB

english, 2009

46

Embedded Based Miniaturized Universal Electrochemical Sensing Platform

Chen, Jiamin, Lin, Yihuang, Gong, Rui, Guo, Jiming, Zeng, Xiangxiang, Liu, Juan

Journal:

Journal of Sensors

Year:

2016

Language:

english

File:

PDF, 4.20 MB

english, 2016

47

Matrix representation and simulation algorithm of spiking neural P systems with structural plasticity

Jimenez, Zechariah B., Cabarle, Francis George C., de la Cruz, Ren Tristan A., Buño, Kelvin C., Adorna, Henry N., Hernandez, Nestine Hope S., Zeng, Xiangxiang

Journal:

Journal of Membrane Computing

Year:

2019

Language:

english

File:

PDF, 2.91 MB

english, 2019

48

Novel pyrrolopyridinone derivatives as anticancer inhibitors towards Cdc7: QSAR studies based on dockings by solvation score approach

Wu, Xiangxiang, Zeng, Huahui, Zhu, Xin, Ma, Qiujuan, Hou, Yimin, Wu, Xuefen

Journal:

European Journal of Pharmaceutical Sciences

Year:

2013

Language:

english

File:

PDF, 5.25 MB

english, 2013

49

Implementation of Arithmetic Operations with Time-free Spiking Neural P Systems

Liu, Xiangrong, Li, Ziming, Liu, Juan, Liu, Logan, Zeng, Xiangxiang

Journal:

IEEE Transactions on NanoBioscience

Year:

2015

Language:

english

File:

PDF, 604 KB

english, 2015

50

[IEEE 2015 IEEE Congress on Evolutionary Computation (CEC) - Sendai, Japan (2015.5.25-2015.5.28)] 2015 IEEE Congress on Evolutionary Computation (CEC) - Short-term optimal hydrothermal scheduling problem considering power flow constraint

Zhang, Jingrui, Lin, Shuang, Zeng, Xiangxiang, Tang, Qinghui

Year:

2015

Language:

english

File:

PDF, 560 KB

english, 2015

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